Files in mskilab/JaBbA
Infer cancer graph genomes from read depth and junctions
.DESCRIPTION.swp
.Rbuildignore
.github/.gitignore
.github/workflows/check-release.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/CPX_matrix.R
R/JaBbA.R
R/Rcplex.R
R/control.R
README.md
codecov.yml
configure
configure.ac
inst/CITATION
inst/extdata/blacklist.coverage.rds
inst/extdata/blacklist.junctions.rds
inst/extdata/cmd.args.rds
inst/extdata/coverage.bw
inst/extdata/coverage.txt
inst/extdata/duplicate.juncs.gg.rds
inst/extdata/duplicate.juncs.grl.rds
inst/extdata/duplicate.juncs.rds
inst/extdata/empty.cov.txt
inst/extdata/empty.junctions.rds
inst/extdata/fix.thres.kag.rds
inst/extdata/hets.txt
inst/extdata/hg19.blacklist.coverage.rds
inst/extdata/human_g1k_v37.chrom.sizes
inst/extdata/invalid.junctions.rds
inst/extdata/jab.cn.gs.2.rds
inst/extdata/jab.cn.gs.rds
inst/extdata/jab.reiterate.cn.gs.2.rds
inst/extdata/jab.reiterate.cn.gs.rds
inst/extdata/jabba.gg.rds
inst/extdata/jabba.raw.rds
inst/extdata/jabba.simple.rds
inst/extdata/jba
inst/extdata/jba_qc
inst/extdata/junctions.bedpe
inst/extdata/junctions.rds
inst/extdata/junctions.vcf
inst/extdata/karyograph.rds
inst/extdata/new.hets.txt
inst/extdata/opt.report.rds
inst/extdata/segs.bw
inst/extdata/segs.rds
inst/extdata/tier.juncs.rds
inst/extdata/whitelist.junctions.rds
jba
old.travis.yml
rtdocs/vignetteGeneral/vignetteGeneral.Rrst
rtdocs/vignetteGeneral/vignetteGeneral.rst
srcs/src.blank/Makevars
srcs/src.blank/Makevars.in
srcs/src.blank/Makevars.win
srcs/src.blank/Rcplex2.c
srcs/src.blank/Rcplex2.h
srcs/src.rcplex/Makevars
srcs/src.rcplex/Makevars.win
srcs/src.rcplex/Rcplex2.c
srcs/src.rcplex/Rcplex2.h
srcs/src.rcplex/Rcplex_params.c
srcs/src.rcplex/Rcplex_utils.c
tests/testthat.R
tests/testthat/test_JaBbA.R
tests/testthat/test_LPJaBbA.R
tests/testthat/test_bw.R
tests/testthat/test_filterloose.R
tests/testthat/test_karyograph.R
