countCigar: Count bases in cigar string
In mskilab/bamUtils: Utility functions for manipulating BAMs
countCigar R Documentation
Count bases in cigar string
Description
Counts the total number of bases, per cigar, that fall into D, I, M, S categories.
countCigar makes no distinction between, for instance 1S2M2S, 2S2M1S, or 3S2M
Usage
countCigar(cigar)
Arguments
cigar
character vector of cigar strings
Value
matrix of dimensions (4-column, length(cigar)) with the total counts for each type
mskilab/bamUtils documentation built on Sept. 28, 2022, 3:45 p.m.
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| countCigar | R Documentation |
Count bases in cigar string
Description
Counts the total number of bases, per cigar, that fall into D, I, M, S categories. countCigar makes no distinction between, for instance 1S2M2S, 2S2M1S, or 3S2M
Usage
countCigar(cigar)
Arguments
cigar |
character vector of cigar strings |
Value
matrix of dimensions (4-column, length(cigar)) with the total counts for each type
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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