get.pairs.grl: Get coverage as GRanges from BAM on custom set of GRanges
In mskilab/bamUtils: Utility functions for manipulating BAMs
get.pairs.grl R Documentation
Get coverage as GRanges from BAM on custom set of GRanges
Description
Takes reads object and returns GRangesList with each read and its mate (if exists)
Usage
get.pairs.grl(reads, pairs.grl.split = TRUE, verbose = FALSE)
Arguments
reads
GRanges holding reads
pairs.grl.split
boolean Flag to return as GRangesList if TRUE (default = TRUE)
verbose
boolean verbose flag (default = FALSE)
mskilab/bamUtils documentation built on Sept. 28, 2022, 3:45 p.m.
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| get.pairs.grl | R Documentation |
Get coverage as GRanges from BAM on custom set of GRanges
Description
Takes reads object and returns GRangesList with each read and its mate (if exists)
Usage
get.pairs.grl(reads, pairs.grl.split = TRUE, verbose = FALSE)
Arguments
reads |
GRanges holding reads |
pairs.grl.split |
boolean Flag to return as GRangesList if TRUE (default = TRUE) |
verbose |
boolean verbose flag (default = FALSE) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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