mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes

The gGnome package provides a flexible, queriable R interface to graphs and walks of reference genomic intervals. gGnome is written in the R6 object oriented standard and built around a powerful GenomicRanges, data.table, and igraph backend, and thus supports agile interaction with graphs consisting of hundreds of thousands of nodes and edges.

install.packages("remotes")
remotes::install_github("mskilab/gGnome")