mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes
The gGnome package provides a flexible, queriable R interface to graphs and walks of reference genomic intervals. gGnome is written in the R6 object oriented standard and built around a powerful GenomicRanges, data.table, and igraph backend, and thus supports agile interaction with graphs consisting of hundreds of thousands of nodes and edges.
Getting started
Browse package contents
Package details |
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| Author | Xiaotong Yao [aut, cre], Marcin Imielinski [aut, cre, ctb] |
| Maintainer | Marcin Imielinski <lab@mskilab.org> |
| License | GPL-3 |
| Version | 0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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