convertEdges: convertEdges
In mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes
convertEdges R Documentation
convertEdges
Description
Takes nodes and edges and converts the edge table for the nodes if they were strandless
gEdge table will be the appropriate table for if we did:
nodes[which(as.logical(strand(nodes)=="+"))]
strand(nodes) = "*"
pre: Nodes have snode.id and index column (indicates index)
edges have sedge.id
Usage
convertEdges(nodes, edges, metacols = FALSE, cleanup = TRUE)
Arguments
nodes
GRanges of signed nodes (ie $pnodes in gGraph object)
edges
data.table of signed edges (ie $pedges in gGraph object)
Author(s)
Joe DeRose
mskilab/gGnome documentation built on May 8, 2024, 4:25 p.m.
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| convertEdges | R Documentation |
convertEdges
Description
Takes nodes and edges and converts the edge table for the nodes if they were strandless gEdge table will be the appropriate table for if we did: nodes[which(as.logical(strand(nodes)=="+"))] strand(nodes) = "*" pre: Nodes have snode.id and index column (indicates index) edges have sedge.id
Usage
convertEdges(nodes, edges, metacols = FALSE, cleanup = TRUE)
Arguments
nodes |
GRanges of signed nodes (ie $pnodes in gGraph object) |
edges |
data.table of signed edges (ie $pedges in gGraph object) |
Author(s)
Joe DeRose
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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