haplograph: haplograph
In mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes
haplograph R Documentation
haplograph
Description
Haplograph creates a graph from a set of walks each which is joined
to a reference graph backbone
i.e. each haplotype is a bubble on the original reference graph
Haplotype ends also branch to each other, as long as the termini
of both haplotype's end nodes are contained in the other end node.
Usage
haplograph(walks, breaks = NULL)
Arguments
walks
gWalk or GRangesList (with seqinfo fully populated)
mskilab/gGnome documentation built on May 8, 2024, 4:25 p.m.
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| haplograph | R Documentation |
haplograph
Description
Haplograph creates a graph from a set of walks each which is joined to a reference graph backbone i.e. each haplotype is a bubble on the original reference graph
Haplotype ends also branch to each other, as long as the termini of both haplotype's end nodes are contained in the other end node.
Usage
haplograph(walks, breaks = NULL)
Arguments
walks |
gWalk or GRangesList (with seqinfo fully populated) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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