gNode: gNode

In mskilab/gGnome: gGnome: reference based assembly graph for analyzing rearranged genomes

gNode

Description

gNode object.

Methods

Public methods

• gNode$new()

• gNode$mark()

• gNode$rep()

• gNode$swap()

• gNode$subset()

• gNode$eval()

• gNode$clusters()

• gNode$ego()

• gNode$print()

• gNode$loose.degree()

• gNode$clone()

---

Method new()

Usage

gNode$new(snode.id = NULL, graph)

---

Method mark()

Usage

gNode$mark(...)

---

Method rep()

Usage

gNode$rep(times)

---

Method swap()

Usage

gNode$swap(replacement)

---

Method subset()

Usage

gNode$subset(i)

---

Method eval()

Usage

gNode$eval(x, right = TRUE, all = FALSE)

---

Method clusters()

Usage

gNode$clusters(mode = "weak")

---

Method ego()

Usage

gNode$ego(order = 0, mindist = 0)

---

Method print()

Usage

gNode$print()

---

Method loose.degree()

Usage

gNode$loose.degree(orientation)

---

Method clone()

The objects of this class are cloneable with this method.

Usage

gNode$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

mskilab/gGnome documentation built on May 8, 2024, 4:25 p.m.