API for mskilab/skidb
Collection of R functions for accessing and parsing flat file dumps of common databases and external software used by @mskilab.
| Global functions | |
|---|---|
| .gencode_transcript_split | Source code |
| .logo2pssm | Source code |
| .procbamlines | Source code |
| bam.read | Man page Source code |
| bam2bw | Source code |
| blastp | Source code |
| bw2rle | Source code |
| dreme | Man page Source code |
| dump_dranger_for_IGV_snapshots | Source code |
| dump_mutations_for_IGV_snapshots | Source code |
| fh_getcontainers | Source code |
| fh_import | Source code |
| fh_start | Source code |
| fh_status | Source code |
| fiss_delete | Source code |
| fiss_get | Source code |
| fiss_getcontainers | Source code |
| fiss_import | Source code |
| fiss_list | Source code |
| fiss_new_set | Source code |
| fiss_task | Source code |
| gaf2gr | Source code |
| get_alignment_summaries | Source code |
| get_fh | Source code |
| get_ucsc_bands | Source code |
| get_ucsc_chroms | Source code |
| make_txdb | Source code |
| matchPSSM | Source code |
| mdb | Man page Source code |
| meme | Man page Source code |
| moglow | Man page Source code |
| muscle | Source code |
| process_gaf | Source code |
| process_pfam | Source code |
| process_pfam_meta | Source code |
| process_repeatmasker | Source code |
| process_uniprot_acmap | Source code |
| process_uniprot_ft | Source code |
| process_uniprot_rs | Source code |
| read.xml | Man page Source code |
| read_10x | Source code |
| read_ccds_fa | Source code |
| read_cmap | Source code |
| read_ensembl | Source code |
| read_entrez | Source code |
| read_gaf | Source code Source code |
| read_gencode | Source code |
| read_gmt | Source code |
| read_hg | Source code |
| read_hg_bionano | Source code |
| read_hg_context | Source code |
| read_hicdomain | Source code |
| read_kg | Source code |
| read_lumpy | Source code |
| read_maf | Source code |
| read_msigdb | Source code |
| read_peaks | Man page Source code |
| read_pfam | Source code |
| read_pfam_meta | Source code |
| read_prego | Source code |
| read_refGene | Source code |
| read_rsem | Source code |
| read_snpdata | Source code |
| read_stockholm | Source code |
| read_txdb | Source code |
| read_ucsc_files_table | Source code |
| read_uniprot_fa | Source code |
| read_uniprot_ft | Source code |
| read_uniprot_map | Source code |
| read_vcf | Man page Source code |
| read_xmap | Source code |
| rg2exons | Source code |
| skidb_env | Source code |
| tcga_bcr2four | Source code |
| uniprot_seqinfo | Source code |
| wig2bw | Source code |
| wig2covered | Source code |
| wig2rle | Source code |
| write.mdb | Man page Source code |
| write_cmap | Source code |
| write_vcf | Man page Source code Source code |
