View source: R/skidb.R View source: R/skidb.R
write_vcf | R Documentation |
writes any GRanges vars into vcf using columns of vars to guide choice of common fields like $FILTER $GT $REF $ALT
and adding all other fields to INFO
writes any GRanges vars into vcf using columns of vars to guide choice of common fields like $FILTER $GT $REF $ALT
and adding all other fields to INFO
write_vcf( vars, filename, sname = "mysample", info.fields = setdiff(names(values(vars)), c("FILTER", "GT", "REF", "ALT")) ) write_vcf( vars, filename, sname = "mysample", info.fields = setdiff(names(values(vars)), c("FILTER", "GT", "REF", "ALT")) )
vars |
info info |
filename |
string Path to output VCF |
sname |
string Sample name (defautl = 'mysample') |
info.fields |
info info |
Marcin Imielinski
Marcin Imielinski
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