API for mskilab/skidb
Collection of R functions for accessing and parsing flat file dumps of common databases and external software used by @mskilab.

Global functions
bam.read Man page Source code
bam2bw Source code
blastp Source code
bw2rle Source code
dreme Man page Source code
dump_dranger_for_IGV_snapshots Source code
dump_mutations_for_IGV_snapshots Source code
fh_getcontainers Source code
fh_import Source code
fh_start Source code
fh_status Source code
fiss_delete Source code
fiss_get Source code
fiss_getcontainers Source code
fiss_import Source code
fiss_list Source code
fiss_new_set Source code
fiss_task Source code
gaf2gr Source code
gencode_transcript_split Source code
get_alignment_summaries Source code
get_fh Source code
get_ucsc_bands Source code
get_ucsc_chroms Source code
logo2pssm Source code
make_txdb Source code
matchPSSM Source code
mdb Man page Source code
meme Man page Source code
moglow Man page Source code
muscle Source code
procbamlines Source code
process_gaf Source code
process_pfam Source code
process_pfam_meta Source code
process_repeatmasker Source code
process_uniprot_acmap Source code
process_uniprot_ft Source code
process_uniprot_rs Source code
read.xml Man page Source code
read_10x Source code
read_ccds_fa Source code
read_ensembl Source code
read_entrez Source code
read_gaf Source code Source code
read_gencode Source code
read_gmt Source code
read_hg Source code
read_hg_bionano Source code
read_hg_context Source code
read_hicdomain Source code
read_kg Source code
read_lumpy Source code
read_maf Source code
read_msigdb Source code
read_peaks Man page Source code
read_pfam Source code
read_pfam_meta Source code
read_prego Source code
read_refGene Source code
read_rsem Source code
read_snpdata Source code
read_stockholm Source code
read_txdb Source code
read_ucsc_files_table Source code
read_uniprot_fa Source code
read_uniprot_ft Source code
read_uniprot_map Source code
read_vcf Man page Source code
rg2exons Source code
skidb_env Source code
tcga_bcr2four Source code
uniprot_seqinfo Source code
wig2bw Source code
wig2covered Source code
wig2rle Source code
write.mdb Man page Source code
write_vcf Man page Man page Source code Source code
mskilab/skidb documentation built on April 4, 2018, 5:44 a.m.