allele_multiplicity: allele_multiplicity
In mskilab/skitools: Various mskilab R utilties
allele_multiplicity R Documentation
allele_multiplicity
Description
Given individuals file (with either Purity value or a bsp_participant_id or Tumor_scan_name columns)
and maf file annotated with absolut copy number (maf$cn.tot) and column $patient for firehose id.
You can provide maf without cn.tot annotations latter case will pull absolute segs
using bsp_participant_id in ind and annotate, but may take a few minutes to pull.
Usage
allele_multiplicity(ind, maf, abs.seg = NULL, verbose = TRUE)
Author(s)
Marcin Imielinski
mskilab/skitools documentation built on March 5, 2025, 11:52 p.m.
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| allele_multiplicity | R Documentation |
allele_multiplicity
Description
Given individuals file (with either Purity value or a bsp_participant_id or Tumor_scan_name columns) and maf file annotated with absolut copy number (maf$cn.tot) and column $patient for firehose id.
You can provide maf without cn.tot annotations latter case will pull absolute segs using bsp_participant_id in ind and annotate, but may take a few minutes to pull.
Usage
allele_multiplicity(ind, maf, abs.seg = NULL, verbose = TRUE)
Author(s)
Marcin Imielinski
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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