allele_multiplicity: allele_multiplicity

allele_multiplicityR Documentation

allele_multiplicity

Description

Given individuals file (with either Purity value or a bsp_participant_id or Tumor_scan_name columns) and maf file annotated with absolut copy number (maf$cn.tot) and column $patient for firehose id.

You can provide maf without cn.tot annotations latter case will pull absolute segs using bsp_participant_id in ind and annotate, but may take a few minutes to pull.

Usage

allele_multiplicity(ind, maf, abs.seg = NULL, verbose = TRUE)

Author(s)

Marcin Imielinski


mskilab/skitools documentation built on July 5, 2024, 7:27 a.m.