allele_multiplicity | R Documentation |
Given individuals file (with either Purity value or a bsp_participant_id or Tumor_scan_name columns) and maf file annotated with absolut copy number (maf$cn.tot) and column $patient for firehose id.
You can provide maf without cn.tot annotations latter case will pull absolute segs using bsp_participant_id in ind and annotate, but may take a few minutes to pull.
allele_multiplicity(ind, maf, abs.seg = NULL, verbose = TRUE)
Marcin Imielinski
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