bsub_cmd | R Documentation |
Makes bsub command that wraps shell command "cmd" to send to queue "queue" redirebmccting output / error etc streams to path prefixed by "jname", optional_args: maximum memory requirements "mem", "jlabel" job label b
bsub_cmd(
cmd,
queue,
jname = NULL,
jlabel = NULL,
jgroup = NULL,
mem = NULL,
group = "cgafolk",
cwd = NULL,
mc.cores = NULL,
deadline = F
)
cmd |
length n vector of shell commands, optionally named, one per job |
queue |
optional length n or length 1 character specifying queue to send jobs to (default hour) |
jname |
optional length n character specifying names of jobs, this will be the root of the output files generated by the job |
jlabel |
optional length n character specifying labels of jobs, this the string |
jgroup |
optional length n character specifying job group name |
mem |
length n or length 1 integer specifying GB of memory to be used by jobs |
group |
character specifying job group (default cgafolk) |
cwd |
character specifying which working directory to launch jobs from (default is current working directory of R session) |
mc.cores |
length n or 1 integer specifying how many cores to assign to each job |
deadline |
logical flag whether to send jobs to deadline queue |
character vector of bsub commands, which can run using system or dumped to a shell script
Marcin Imielinski
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