API for mskilab/skitools
Various mskilab R utilties

Global functions
abs2rel Source code
adj2inc Source code
af Source code
af2 Source code
affine.map Source code
all.paths Source code
allele_multiplicity Source code
alpha Source code
anno.gwalk Source code
anno.hop Man page Source code Source code
annotate.walks Source code
bisort Source code
blend Source code
border Source code
brew Source code
brewer.master Source code
bsub_cmd Source code
cameraplot Source code
capitalize Source code
cc Source code
ccf Source code
charToDec Source code
chr2num Source code
chron Source code
chunk Source code
class Source code
clock Source code
clone_cluster Source code
col.scale Source code Source code Source code
collapse.paths Source code
coloredData Source code
counts2rpkm Source code
cumseg Source code
d3igraph Source code
dcast2 Source code
ddd Source code
dedup Source code Source code
dev.all.off Source code
dflm Source code
dfstring Source code
dirr Source code
discordant.pairs Source code
dmix Source code
dodo.call Source code
dplot Source code
dtgr Source code
elcycles Source code
file.dir Source code
file.name Source code
fill.blanks Source code
fisher.combined Source code
fisher.pairwise Source code
fisher.plot Source code
flatten Source code
footprint Source code
fready Source code
fuckr Source code
func_code Source code
fusions Source code
gatk_callvariants Source code
gatk_haplotypecaller Source code
gatk_oncotate Source code
gc_content Source code
get.constrained.shortest.path Source code
get.field.widths Source code
get.fwf.widths Source code
get.varcol Source code
gigs Source code
gr.all Source code
gr.breaks Source code
gr.flip Source code
gr.isclip Source code
gr.isdisc Source code
gr.mincov Source code
gr.pad Source code
gr.peaks Source code
gr.readfilter Source code
gr.reduce Source code
gr.refactor Source code
gr.round Source code
gr.tostring Source code
gr2gatk Source code
gr2grl Source code
gr2json Source code
grl.filter Source code
grl.span Source code
grl.split Source code
grl.stripnames Source code
grok_vcf Source code
gsea_leading_edge Source code
gstring Source code
gv_host Source code
headf Source code
heatmap.plus Source code
hets Source code
html_link Source code
html_tag Source code
igv Source code
igv.cmd Source code
igv.loci Source code
img.html Source code
img_link Source code
import.ucsc Source code
ind2sub Source code
install.packages.bioc Source code
install.packages.github Source code
is.dup Source code
jab2json Man page Source code
jabba.dist Source code
jabba.gwalk Man page Source code
jabba.hood Source code
jabba.kid Man page Source code
jabba.melt Source code
jabba.walk Source code
jbaMIP.allelic Source code
jbaMIP.process Source code
jbaMIP.summarize Source code
jgraph Man page Source code
junction.paths Source code
karyoMIP Source code
karyoMIP.to.path Source code
karyoSim Source code
karyotrack Man page Source code
kill.zombies Source code
label.runs Source code
ldim Source code
levapply Source code
lighten Source code
line.counts Source code
list.expr Source code
loose.ends Source code
loud Source code
ls.objects Source code
lsos Source code
maf2vcf Source code
maf_classify Source code
maf_coding Source code
maf_disp Source code
maf_exonic Source code
maf_genic Source code
maf_indel Source code
maf_nonsyn Source code
maf_ns Source code
maf_sub Source code
maf_syn Source code
maf_to_simple Source code
maf_truncating Source code
maflite Source code
matcart Source code
match.bs Source code Source code
match.seg.id Source code
match.seq Source code
mmatch Man page Source code Source code
modix Source code Source code
morder Source code
more Source code
mski_alpha Source code
mtable Source code
muffle Source code
multicoco Source code
munlist Source code
mut_genecluster Source code
mutclusters Source code
mutpairsd Source code
mutrate_window Source code
nz Source code
oneoffs Source code
padding Source code
parsesnpeff Source code
phist Source code
pindel Source code
plop Source code
plot.blank Source code
plot_multiplicity Source code
pmGSEA Source code
pp2gb Source code
ppdf Source code
ppgrid Source code
ppng Source code
print_eq Source code
proximity Source code
pscatter Source code
qhost Source code
qq_pval Source code
qstat Source code
query_lsf_out Source code
queues Source code
quickSig Source code
qviz Source code
ra.dedup Source code
ra.duplicated Source code
ra.merge Source code
ra.setdiff Source code
ra.union Source code
ra_breaks Source code
ra_tier Man page Source code
read.delim.cat Source code
readRDA Source code
read_hg Source code
reads.to.walks Source code
relib Source code
reorder_maf Source code
rmix Source code
rpipe Source code
rrbind Man page Source code
rrbind2 Source code
sc.context Source code
score.walks Source code
seconds Source code
seqinfo2gr Source code
set.comp Source code
setxor Source code
sortable Source code
sparse_subset Source code Source code
splot Source code
standardize_segs Source code
staveRDS Source code
strsplit.fwf Source code
strsplit2 Source code
sub2ind Source code
subset2 Source code
summary.df Source code
svec Source code
system.call Source code
tabstring Source code
tailf Source code
timestamp Source code
toggle_grfo Source code
ucount Source code
vaggregate Source code
vplot Source code
wfplot Source code
which.char Source code
wij Source code
wijj Source code
write.htab Source code
write.tab Source code
mskilab/skitools documentation built on May 22, 2018, 5:54 a.m.