API for mskilab/skitools
Various mskilab R utilties

Global functions
.igv_host Man page
.toggle_grfo Man page
\%!\% Man page
\%~\% Man page
af Man page Source code
af2 Man page Source code
affine.map Man page Source code
allele_multiplicity Man page Source code
alpha Man page Source code
bisort Man page Source code
blend Man page Source code
border Man page Source code
brew Source code
brewer.master Man page Source code
bsub_cmd Man page Source code
cameraplot Man page Source code
camerplot Man page
capitalize Man page Source code
cc Source code
ccf Man page Source code
charToDec Man page Source code
chr2num Man page Source code
chron Man page Source code
chunk Man page Source code
clock Man page Source code
clone_cluster Man page Source code
col.scale Man page Man page Man page Source code Source code Source code
col.slice Man page
coloredData Man page Man page Source code
d3igraph Source code
dcast2 Man page Source code
ddd Man page Source code
dedup Man page Man page Source code Source code
dev.all.off Man page Source code
dflm Source code
dfstring Man page Source code
dirr Man page Source code
discordant.pairs Man page Source code
dmix Man page Source code
dodo.call Source code
dplot Man page Source code
dtgr Man page Source code
elcycles Man page Source code
file.dir Man page Source code
file.name Man page Source code
fill.blanks Source code
fisher.combined Man page Source code
fisher.pairwise Man page Source code
fisher.plot Man page Source code
flatten Source code
footprint Source code
fready Man page Source code
fuckr Man page Source code
func_code Man page Source code
gatk_callvariants Man page Source code
gatk_haplotypecaller Man page Source code
gatk_oncotate Man page Source code
gc_content Man page Source code
get.field.widths Source code
get.fwf.widths Source code
gigs Source code
gr.all Man page Source code
gr.flip Source code
gr.isclip Man page Source code
gr.isdisc Man page Source code
gr.mincov Man page Source code
gr.pad Man page Source code
gr.peaks Man page Source code
gr.readfilter Man page Source code
gr.reduce Man page Source code
gr.refactor Man page Source code
gr.round Man page Source code
gr.tostring Man page Source code
gr2gatk Man page Source code
gr2grl Man page Source code
grl.filter Man page Source code
grl.span Man page Source code
grl.split Man page Source code
grok_vcf Source code
gsea_leading_edge Man page Source code
gstring Man page Source code
gv_host Source code
headf Man page Source code
heatmap.plus Man page Source code
hets Man page Source code
html_link Man page Source code
html_tag Man page Source code
igv Man page Source code
igv.cmd Source code
igv.loci Man page Source code
img.html Man page Source code
img_link Man page Source code
import.ucsc Man page Source code
ind2sub Man page Source code
install.packages.bioc Man page Source code
install.packages.github Man page Source code
is.dup Man page Source code
kill.zombies Source code
label.runs Source code
ldim Man page Source code
levapply Man page Source code
lighten Man page Source code
line.counts Source code
list.expr Man page Source code
loud Man page Source code
ls.objects Source code
lsf_query Man page
lsos Source code
maf2vcf Man page Source code
maf_classify Man page Source code
maf_coding Man page Source code
maf_disp Man page Source code
maf_exonic Man page Source code
maf_genic Man page Source code
maf_indel Man page Source code
maf_nonsyn Man page Source code
maf_nonyn Man page
maf_ns Man page Source code
maf_sub Man page Source code
maf_syn Man page Source code
maf_to_simple Man page Source code
maf_truncating Man page Source code
mafcount Man page Source code
maflite Man page Source code
matcart Source code
match.bs Man page Source code
match.seg.id Source code
match.seq Source code
mmatch Man page Source code
modix Man page Man page Source code Source code
morder Man page Source code
more Man page Source code
mtable Man page Source code
muffle Man page Source code
munlist Man page Source code
mut_genecluster Man page Source code
mutclusters Man page Source code
mutpairsd Man page Source code
mutrate_window Man page Source code
nz Man page Source code
pad Man page Source code
parsesnpeff Man page Source code
phist Man page Source code
pindel Man page Source code
plop Man page Source code
plot.blank Man page Source code
plot_multiplicity Man page Source code
pmGSEA Source code
ppdf Man page Source code
ppng Man page Source code
qhost Man page Source code
qq_pval Man page Source code
qstat Man page Source code
query_lsf_out Man page Source code
queues Man page Source code
quickSig Man page Source code
qviz Source code
ra.overlaps Man page
ra.setdiff Man page Source code
ra.union Man page Source code
ra_breaks Man page Source code
read.delim.cat Man page Source code
readRDA Man page Source code
read_hg Man page Source code
relib Man page Source code
reorder_maf Man page Source code
rmix Man page Source code
row.slice Man page
rpipe Man page Source code
rrbind2 Man page Source code
sc.context Source code
score.walks Source code
seconds Source code
seqinfo2gr Man page Source code
set.comp Man page Source code
setxor Man page Source code
sortable Man page Source code
sparse_subset Man page Source code
splot Man page Source code
standardize_segs Man page Source code
staveRDS Source code
strsplit.fwf Man page Source code
strsplit2 Man page Source code
sub2ind Man page Source code
subset2 Source code
summary.df Source code
svec Source code
system.call Man page Source code
tabstring Man page Source code
tailf Man page Source code
timestamp Man page Source code
toggle_grfo Man page Source code
ucount Man page Source code
vaggregate Man page Source code
varcount Man page Source code
vplot Man page Source code
wfplot Man page Source code
which.char Man page Source code
wij Man page Source code
wijj Man page Source code
write.htab Man page Source code
write.tab Man page Source code
mskilab/skitools documentation built on Nov. 9, 2017, 7:27 p.m.