gr.isdisc: Checks if reads are discordant

In mskilab/skitools: Various mskilab R utilties

Checks if reads are discordant

Description

Returns a logical vector denoting if a read is discordant. There is only a minimum absolute isize, and any read below this is not considered discordant. This will return logicals based on read pairs

Usage

gr.isdisc(gr, isize = 1000, unmap.only = FALSE)

Arguments

gr	Granges OR data.table that has isize field and qname field
isize	Minimum insert size required to call dis<cordant. Default 1000
unmap.only	Find only pairs with an unmapped read

Value

logical vector of length of input, denoting each read as discordant or not

mskilab/skitools documentation built on July 5, 2024, 7:27 a.m.