discordant.pairs: Label discordant read pairs

discordant.pairsR Documentation

Label discordant read pairs

Description

Labels read pairs discordant based on whether they have (1) ++ or – strand orientation (2) "-" strand read start is not greater than dmin or less than dmin ahead of "+" strand read on same chromosome

Usage

discordant.pairs(pairs, inter.only = F, dmin = 50, dmax = 500)

Note

need to merge with gr.isdisc


mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.