get.pileup.gtrack: get.pileup.gtrack
In mskilab/skitools: Various mskilab R utilties
get.pileup.gtrack R Documentation
get.pileup.gtrack
Description
Get a gTrack object with fraction reads matching the major and minor allele in het pileup counts.
Usage
get.pileup.gtrack(sites)
Arguments
sites
output of het pileup (either a data.table object or a path to the tab-delimited file containing the output)
Details
Returns a gTrack object with two tracks one for tumor reads and one for the matched normal.
Minor and major allele are colored by green and red respectively.
Value
gTrack object with two tracks corresponding to normal and tumor minor and major allele frequencies
Author(s)
Alon Shaiber
mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.
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| get.pileup.gtrack | R Documentation |
get.pileup.gtrack
Description
Get a gTrack object with fraction reads matching the major and minor allele in het pileup counts.
Usage
get.pileup.gtrack(sites)
Arguments
sites |
output of het pileup (either a data.table object or a path to the tab-delimited file containing the output) |
Details
Returns a gTrack object with two tracks one for tumor reads and one for the matched normal. Minor and major allele are colored by green and red respectively.
Value
gTrack object with two tracks corresponding to normal and tumor minor and major allele frequencies
Author(s)
Alon Shaiber
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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