gc_content: Get GC content from reference genome
In mskilab/skitools: Various mskilab R utilties
gc_content R Documentation
Get GC content from reference genome
Description
Uses BSgenome package to compute gc content for a collection of segments in seg data frame ($chr, $start, $end or $chr, $pos1, $pos2 or $chr, $begin, $end)
Returns vector of gc content of length nrow(segs).
Usage
gc_content(segs, bs_genome)
Arguments
segs
Segment data frame to pull gc from
bs_genome
A BSgenome object. Perhaps BSgenome.Hsapiens.UCSC.hg19::Hsapiens
mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.
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| gc_content | R Documentation |
Get GC content from reference genome
Description
Uses BSgenome package to compute gc content for a collection of segments in seg data frame ($chr, $start, $end or $chr, $pos1, $pos2 or $chr, $begin, $end) Returns vector of gc content of length nrow(segs).
Usage
gc_content(segs, bs_genome)
Arguments
segs |
Segment data frame to pull gc from |
bs_genome |
A |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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