gc_content: Get GC content from reference genome

gc_contentR Documentation

Get GC content from reference genome

Description

Uses BSgenome package to compute gc content for a collection of segments in seg data frame ($chr, $start, $end or $chr, $pos1, $pos2 or $chr, $begin, $end) Returns vector of gc content of length nrow(segs).

Usage

gc_content(segs, bs_genome)

Arguments

segs

Segment data frame to pull gc from

bs_genome

A BSgenome object. Perhaps BSgenome.Hsapiens.UCSC.hg19::Hsapiens


mskilab/skitools documentation built on July 5, 2024, 7:27 a.m.