gr.mincov: Return windows with minimal coverage

In mskilab/skitools: Various mskilab R utilties

Return windows with minimal coverage

Description

Takes a set of GRanges and removes any ranges that don't have a minimal coverage value. If you give it a GRangesList, you will get back an unlisted GRanges.

Usage

gr.mincov(
  gr,
  min.cov = 2,
  buffer = 0,
  ignore.strand = TRUE,
  pintersect = FALSE
)

Arguments

gr	GRanges to filter
min.cov	Minimum number of overlaps to keep. Default 2
buffer	Add a buffer to the ranges when computing overlaps. Default 0
ignore.strand	Ignore the strand when comparing overlaps. Default TRUE
pintersect	Force the pintersect option for gr.findoverlaps

Value

GRanges

mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.