ssegment: wrapper around DNAcopy to segment a coverage profile
In mskilab/skitools: Various mskilab R utilties
ssegment R Documentation
wrapper around DNAcopy to segment a coverage profile
Description
Internal function utilizing DNAcopy to segment a coverage profile
Usage
ssegment(cov, field = NULL, log = TRUE, verbose = TRUE, alpha = 1e-05)
Arguments
tcov
GRanges of binned genome-wide coverage
Value
GRanges of genomewise segments of piecewise constant coverage
Author(s)
Marcin Imielinski
mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.
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| ssegment | R Documentation |
wrapper around DNAcopy to segment a coverage profile
Description
Internal function utilizing DNAcopy to segment a coverage profile
Usage
ssegment(cov, field = NULL, log = TRUE, verbose = TRUE, alpha = 1e-05)
Arguments
tcov |
GRanges of binned genome-wide coverage |
Value
GRanges of genomewise segments of piecewise constant coverage
Author(s)
Marcin Imielinski
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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