ssegment: wrapper around DNAcopy to segment a coverage profile

In mskilab/skitools: Various mskilab R utilties

wrapper around DNAcopy to segment a coverage profile

Description

Internal function utilizing DNAcopy to segment a coverage profile

Usage

ssegment(cov, field = NULL, log = TRUE, verbose = TRUE, alpha = 1e-05)

Arguments

tcov	GRanges of binned genome-wide coverage

Value

GRanges of genomewise segments of piecewise constant coverage

Author(s)

Marcin Imielinski

mskilab/skitools documentation built on June 15, 2025, 2:54 p.m.