qq_pval: qq plot given input p values
In mskilab/skitools: Various mskilab R utilties

qq_pval

R Documentation

qq plot given input p values

Description

qq plot given input p values

Usage

qq_pval(
  obs,
  highlight = c(),
  exp = NULL,
  lwd = 1,
  bestfit = T,
  col = NULL,
  col.bg = "black",
  pch = 18,
  cex = 1,
  conf.lines = FALSE,
  max = NULL,
  max.x = NULL,
  max.y = NULL,
  qvalues = NULL,
  label = NULL,
  repel = FALSE,
  plotly = FALSE,
  annotations = list(),
  gradient = list(),
  titleText = "",
  subsample = NA,
  ...
)

Arguments

`obs`	vector of pvalues to plot, names of obs can be intepreted as labels
`highlight`	optional arg specifying indices of data points to highlight (ie color red)
`lwd`	integer, optional, specifying thickness of line fit to data
`pch`	integer dot type for scatter plot
`cex`	integer dot size for scatter plot
`conf.lines`	logical, optional, whether to draw 95 percent confidence interval lines around x-y line
`max`	numeric, optional, threshold to max the input p values
`label`	length(obs) charater vector of labels (NULL)
`repel`	logical flag whether to use ggrepel
`plotly`	toggles between creating a pdf (FALSE) or an interactive html widget (TRUE)
`annotations`	named list of vectors containing information to present as hover text (html widget), must be in same order as obs input
`gradient`	named list that contains one vector that color codes points based on value, must bein same order as obs input
`titleText`	title for plotly (html) grcaph only
`samp`	integer, optional specifying how many samples to draw from input data (default NULL)