read_hg: Wrapper around BSgenome call

In mskilab/skitools: Various mskilab R utilties

Wrapper around BSgenome call

Description

Retreives either the BSgenome hg18 or hg19 genome by default. Requires packages BSgenome.Hsapiens.UCSC.hg19 for hg19 and BSgenome.Hsapiens.UCSC.hg19 for hg18.

Usage

read_hg(hg19 = T, fft = F)

Arguments

hg19	Logical whether to return hg18 or hg19 BSgenome. Default TRUE
fft	Logical whether to return an ffTrack. Default FALSE

Details

If fft = TRUE, can also also return the hg19 ffTrack (requires that the file exists) Requires the existence of environment variable HG.FFT pointing to ffTrack .rds file..

Value

BSgenome or ffTrack of the genome

mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.