vplot: vplot

In mskilab/skitools: Various mskilab R utilties

vplot

Description

Quick violin plot

Usage

vplot(
  y,
  group = "x",
  facet1 = NULL,
  facet2 = NULL,
  col.sina = NULL,
  transpose = FALSE,
  flip = FALSE,
  mapping = NULL,
  stat = "ydensity",
  position = "dodge",
  trim = TRUE,
  sample = NA,
  scale = "width",
  log = FALSE,
  log1p = FALSE,
  count = TRUE,
  xlab = NULL,
  ylim = NULL,
  ylab = NULL,
  minsup = NA,
  scatter = FALSE,
  wes = "Royal1",
  col = NULL,
  method = "count",
  sina = !is.null(col.sina),
  sina.scale = FALSE,
  text = NULL,
  reorder = FALSE,
  reorder.fun = mean,
  cex = 1,
  cex.axis = 1,
  cex.title = 1,
  cex.scatter = 2 * cex,
  col.scatter = alpha("black", 0.5),
  col.background = "gray",
  alpha = 1,
  title = NULL,
  legend.ncol = NULL,
  legend.nrow = NULL,
  vfilter = TRUE,
  vplot = TRUE,
  dot = FALSE,
  stackratio = 1,
  binwidth = 0.1,
  plotly = FALSE,
  print = TRUE,
  facet_scales = "fixed"
)

Arguments

y	numeric data vector
group	length(y) vector of categories
facet1	optional length(y) vector of row categories to facet on (=NULL)
facet2	optional length(y) vector of column categories to facet on (=NULL)
col.sina	data vector to specify size in sina plot (NULL) will trigger sina = TRUE if not null
transpose	logical vector whether flip row / column orientation of facets (=FALSE)
mapping	mapping of groups to colors (=NULL)
scale	scale parameter to geom_vplot (=width), can also be "area" and "count"
log	logical flag whether to log transform (=FALSE)
count	logical flag whether to include counts in ylabels (=TRUE)
xlab	character xlabel (=NULL)
ylab	character ylabel (=NULL)
minsup	minimum support to include in a group (=NA)
scatter	logical flag whether to include scatter of points (=FALSE)
sina	logical flag whether to sina
reorder	logical flag whether to reorder groups by order.fun (which by default is mean)
reorder.fun	function on which to order from left to right (default mean)
alpha	numeric vector between 0 and 1 to specify alpha transparency of points if scatter is TRUE (0.3)
title	character specifying plot title (=NULL)
facet_scales	character specifying scales arg in ggplot2::facet_grid()

Author(s)

Marcin Imielinski

mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.