maf_disp: maf_disp

In mskilab/skitools: Various mskilab R utilties

maf_disp

Description

Quick display of rows of data.frame holding contents of Oncotated maf file

Usage

maf_disp(
  maf,
  flavor = NULL,
  sorted = F,
  show.pat = TRUE,
  extra_cols = NULL,
  gene = NULL,
  pat = NULL
)

Arguments

maf	data.frame with Oncotated maf columns
flavor	character specifying 'functional' or 'validation' flavors, which correspond to special column slices of maf data.frame (= NULL)
sorted	logical flag whether to return output sorted by gene, variant classificaiton, uniprot site, then patient (=FALSE)
show.pat	logical flag whether to show patient (=TRUE)
gene	character vector of Hugo_Symbol to subset on (=NULL)
pat	character vector of Tumor_Sample_Barcodes to subset on (=NULL)
extra_col	character vector of additional columns to include (=NULL)

Value

character vector or sliced data.frame

Author(s)

Marcin Imielinski

mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.