gr.readfilter: Filter reads by average PHRED score Defines a cutoff score...
In mskilab/skitools: Various mskilab R utilties
gr.readfilter R Documentation
Filter reads by average PHRED score
Defines a cutoff score for the mean PHRED quality of a read
in a GRanges.
Description
Filter reads by average PHRED score
Defines a cutoff score for the mean PHRED quality of a read
in a GRanges.
Usage
gr.readfilter(gr, cutoff = "+")
Arguments
gr
GRanges or data.table of reads that has a qname and qual field
cutoff
cutoff score for mean PHRED quality. Default "+"
Value
GRanges or data.table where reads have mean quality score >= cutoff
mskilab/skitools documentation built on March 5, 2025, 11:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| gr.readfilter | R Documentation |
Filter reads by average PHRED score Defines a cutoff score for the mean PHRED quality of a read in a GRanges.
Description
Filter reads by average PHRED score Defines a cutoff score for the mean PHRED quality of a read in a GRanges.
Usage
gr.readfilter(gr, cutoff = "+")
Arguments
gr |
GRanges or data.table of reads that has a |
cutoff |
cutoff score for mean PHRED quality. Default "+" |
Value
GRanges or data.table where reads have mean quality score >= cutoff
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.