gr.readfilter: Filter reads by average PHRED score Defines a cutoff score...

gr.readfilterR Documentation

Filter reads by average PHRED score Defines a cutoff score for the mean PHRED quality of a read in a GRanges.

Description

Filter reads by average PHRED score Defines a cutoff score for the mean PHRED quality of a read in a GRanges.

Usage

gr.readfilter(gr, cutoff = "+")

Arguments

gr

GRanges or data.table of reads that has a qname and qual field

cutoff

cutoff score for mean PHRED quality. Default "+"

Value

GRanges or data.table where reads have mean quality score >= cutoff


mskilab/skitools documentation built on Aug. 31, 2023, 1:13 p.m.