gr.isclip: Check if reads are clipped
In mskilab/skitools: Various mskilab R utilties
gr.isclip R Documentation
Check if reads are clipped
Description
Returns a logical vector of length of the input GRanges that
that classifies a read as clipped or not. The user can specify
a cutoff value for how many bases need to be clipped.
Usage
gr.isclip(gr, clip.cutoff = 10)
Arguments
gr
Granges OR data.table that has cigar field and qname field
clip.cutoff
Minimum number of bases that are clipped to call the reads as clipped
Value
logical of length of input, denoting whether that read is part of a clipped read pair.
mskilab/skitools documentation built on July 5, 2024, 7:27 a.m.
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| gr.isclip | R Documentation |
Check if reads are clipped
Description
Returns a logical vector of length of the input GRanges that that classifies a read as clipped or not. The user can specify a cutoff value for how many bases need to be clipped.
Usage
gr.isclip(gr, clip.cutoff = 10)
Arguments
gr |
Granges OR data.table that has |
clip.cutoff |
Minimum number of bases that are clipped to call the reads as clipped |
Value
logical of length of input, denoting whether that read is part of a clipped read pair.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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