Files in muhligs/Regmex
Motif discovery in ranked lists of sequences
DESCRIPTION
NAMESPACE
R/Regmex-internal.R
R/align.motif.R
R/all.mers.R
R/bb.cumdist.R
R/bb.motif.p.R
R/con.prob.di.R
R/dfa.di.R
R/di.freq.pseudo.R
R/l.clust.R
R/lambda.con.R
R/lambda.con.di.R
R/list.prob.R
R/mot.chop.R
R/motif.list.p.R
R/motif.p.R
R/motifs.seqs.R
R/n.obs.mot.R
R/n.obs.pat.R
R/par.list.prob.R
R/pat.con.R
R/prob.dist.R
R/prob.dist.di.R
R/reg.exp.conv.R
R/rev.comp.R
R/rw.draw.p.R
R/rw.find.n.exc.R
R/rw.max.dist.R
R/rw.max.p.R
R/rw.motif.p.R
R/rw.ss.R
R/rw.transition.matrix.R
R/rw.walk2.R
R/seq.2.freq.di.R
R/seq.2.freq.mono.R
R/seq.con.R
R/seq.list.con.R
R/syl.motif.p.R
R/transition.matrix.R
R/transition.matrix.di.R
R/wc.preamp.R
R/wcmod.p.R
README.md
data/res5.RData
data/seqlist.RData
data/seqlist.Rdata
exec/META-INF/MANIFEST.MF
exec/Main.class
exec/automata.jar
exec/automaton/CyclicAutomaton.class
exec/automaton/dk/brics/Automaton.class
exec/automaton/dk/brics/AutomatonMatcher.class
exec/automaton/dk/brics/AutomatonProvider.class
exec/automaton/dk/brics/BasicAutomata.class
exec/automaton/dk/brics/BasicOperations.class
exec/automaton/dk/brics/Datatypes.class
exec/automaton/dk/brics/DatatypesAutomatonProvider.class
exec/automaton/dk/brics/MinimizationOperations$IntPair.class
exec/automaton/dk/brics/MinimizationOperations$StateList.class
exec/automaton/dk/brics/MinimizationOperations$StateListNode.class
exec/automaton/dk/brics/MinimizationOperations.class
exec/automaton/dk/brics/RegExp$Kind.class
exec/automaton/dk/brics/RegExp.class
exec/automaton/dk/brics/RunAutomaton.class
exec/automaton/dk/brics/ShuffleOperations$ShuffleConfiguration.class
exec/automaton/dk/brics/ShuffleOperations.class
exec/automaton/dk/brics/SpecialOperations.class
exec/automaton/dk/brics/State.class
exec/automaton/dk/brics/StatePair.class
exec/automaton/dk/brics/StringUnionOperations$1.class
exec/automaton/dk/brics/StringUnionOperations$State.class
exec/automaton/dk/brics/StringUnionOperations.class
exec/automaton/dk/brics/Transition.class
exec/automaton/dk/brics/TransitionComparator.class
man/Regmex-package.Rd
man/align.motif.Rd
man/all.mers.Rd
man/l.clust.Rd
man/mot.chop.Rd
man/motif.list.p.Rd
man/motif.p.Rd
man/motifs.seqs.Rd
man/n.obs.mot.Rd
man/n.obs.pat.Rd
man/rev.comp.Rd
man/seq.list.con.Rd
vignettes/Regmex.Rnw
