Regmex-package: Regular expression motif explorer.

In muhligs/Regmex: Motif discovery in ranked lists of sequences

Description

Regmex is a flexible motif analysis package that evaluates rank correlation or clustering of motifs in lists of nucleotide sequences. Motifs can be defined as regular expressions and Regmex evaluates accurate p-values for motif observations in sequences using embedded Markov models.

Details

Package:	Regmex
Type:	Package
Version:	1.0
Date:	2014-09-11
License:	GPL-2

The package contains the main functions motif.p() and motif.list.p() for evaluating rank correlation of a motif or a list of motifs in a list of sequences.

Author(s)

Morten Muhlig Nielsen, Paula Tataru

Maintainer:
Morten Muhlig Nielsen
[e-mail]

References

Regmex, Motif discovery in ranked lists of sequences. (submitted)

See Also

vignette("Regmex")

Examples

data(seqlist)
motif <- "ACG(C|G)TT"
motif.p(seqlist, motif)

muhligs/Regmex documentation built on Sept. 5, 2020, 1:11 a.m.