README.md
In muhligs/Regmex: Motif discovery in ranked lists of sequences
Regmex is a package for evaluation of motif rank correlation in a list of ranked DNA or RNA sequences.
It handles regular expressions for motif definition, and thus allows for evaluation of quite complex motifs.
Also it makes use of embedded Markov models to calculate accurate motif observation probabilities in sequences.
To install:
the latest development version: devtools::install_github("muhligs/Regmex")
}
For details see:
https://www.biorxiv.org/content/10.1101/035956v2
muhligs/Regmex documentation built on Sept. 5, 2020, 1:11 a.m.
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Regmex is a package for evaluation of motif rank correlation in a list of ranked DNA or RNA sequences. It handles regular expressions for motif definition, and thus allows for evaluation of quite complex motifs. Also it makes use of embedded Markov models to calculate accurate motif observation probabilities in sequences.
To install:
the latest development version: devtools::install_github("muhligs/Regmex") }
For details see: https://www.biorxiv.org/content/10.1101/035956v2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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