MULTI.REAL.TIME: Compound Analysis-Multiple

In mummlab/ARQiv: : ARQiv-HTS,Preparing for and Completing Whole-Organism Screening at High-througput rates

Description

This function creates multiple .png files that each contain one Boxplot, SSMD, and Heatmap detailing the results of a specific drug compound plate.

Usage

MULTI.REAL.TIME(Pos.file = NULL, Neg.file = NULL, multi.Drug.file = NULL,
  well.label.file = NULL, Roy.file = NULL, bg.ratio = NULL,
  dic.output = NULL)

Arguments

Pos.file	A .xml file derived from your positive control condition, i.e., that with the highest value. This 'bookends' sets of 10 drug plates.
Neg.file	A .xml file derived from your negative control condition, i.e., that with the lowest value. This 'bookends' sets of 10 drug plates.
multi.Drug.file	Multiple .xml files of drug treatment plates for for comparison to bordering controls.
well.label.file	A .csv denoting the identity of each well of a 96-well plate, by condition or concentration.
Roy.file	A .xml file of raw signal values from a 96-well plate of non-transgenic Roy larvae.
bg.ratio	Numerical minimal 'signal' cutoff value (arbitrary units) applied to isolate fluorescent/luminescent signal above this value.
dic.output	Output directory

Value

multiple .png files which each include: Boxplot, SSMD, and Heatmap detailing a specific drug compound plate.

mummlab/ARQiv documentation built on May 23, 2019, 8:22 a.m.