REAL.TIME: Compound Analysis

Description Usage Arguments Value

View source: R/Analysis.R

Description

This function creates a .png file that contains one Boxplot, SSMD, and Heatmap detailing the results of a drug compound plate.

Usage

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REAL.TIME(Pos.file = NULL, Neg.file = NULL, Drug.file = NULL,
  well.label.file = NULL, Roy.file = NULL, bg.ratio = NULL,
  dic.output = NULL)

Arguments

Pos.file

A .xml file derived from your positive control condition, i.e., that with the highest value.

Neg.file

A .xml file derived from your negative control condition, i.e., that with the lowest value.

Drug.file

A .xml file derived from single drug treatment condition for comparison to controls.

well.label.file

A .csv denoting the identity of each well of a 96-well plate, by condition or concentration.

Roy.file

A .xml file of raw signal values from a 96-well plate of non-transgenic Roy larvae.

bg.ratio

Numerical minimal 'signal' cutoff value (arbitrary units) applied to isolate fluorescent/luminescent signal above this value.

dic.output

Output directory

Value

A .png file including: Boxplot, SSMD, and Heatmap detailing the drug compound plate.


mummlab/ARQiv documentation built on May 23, 2019, 8:22 a.m.