face_removal_mask_ants: Face Removal Mask using ANTs Registration

In muschellij2/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Face Removal Mask using ANTs Registration

Description

Face Removal Mask using ANTs Registration

Usage

face_removal_mask_ants(
  file,
  template = NULL,
  face_mask = NULL,
  outfile = NULL,
  ...,
  retimg = FALSE
)

deface_image_ants(file, ...)

Arguments

file	input image
template	Template image to register input image to. Set to NULL (recommended) if want to use from https://github.com/poldracklab/pydeface. Alternatively, use mni_fname.
face_mask	Mask of image, in same space as template. Set to NULL (recommended) if want to use from https://github.com/poldracklab/pydeface. Alternatively, use mni_face_fname from fsl.
outfile	Output file name
...	additional arguments to pass to registration
retimg	(logical) return image of class nifti

Value

An image or filename depending on retimg

Examples

if (fslr::have_fsl()) {
   file = "~/Downloads/sample_T1_input.nii.gz"
   if (file.exists(file)) {
       mask = face_removal_mask_ants(file = file,
         template = NULL, face_mask = NULL)
       image = mask_img(file, mask)
   }
}

muschellij2/extrantsr documentation built on June 3, 2024, 7:04 p.m.