Files in muschellij2/extrantsr

Extra Functions to Build on the 'ANTsR' Package

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.gitignore

.noncustom_travis_yaml.yml

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/T1_Registration_function.R R/ants.extract.R R/ants.overlay.R R/antsCopy.R R/ants_apply_transforms.R R/ants_bwlabel.R R/ants_regwrite2.R R/applyEmptyImageDimensions.R R/apply_malf_regs.R R/apply_multi_reg.R R/bias_correct.R R/brain_extract.R R/c3d.R R/check_ants.R R/check_nifti.R R/checkimg_antsImage.R R/compose_transform_to_file.R R/corr_img.R R/cort_thickness.R R/create_moment.R R/diff_self.R R/emptyImageDimensionsMask.R R/ensure_array.antsImage.R R/face_removal_mask_ants.R R/fill_2d_z.R R/filler.R R/finite_img.R R/fslbet_robust.R R/group_xyz2.R R/image_func.R R/image_similarity.R R/img_cov_matrix.R R/img_density_entropy.R R/img_hist_entropy.R R/img_split.R R/inpaint.R R/jacobian.R R/label_mask.R R/largest_component.R R/local_quantile_img.R R/malf.R R/malf_registration.R R/maskEmptyImageDimensions.R R/mask_img.antsImage.R R/multi_reg.R R/multi_rereg.R R/mutual_information.R R/n4_4d.R R/neighborhood.R R/neighborhood_index.R R/non_exported.R R/oMask.R R/oMath.R R/oasis.R R/oro2ants.R R/ortho2.R R/otropos.R R/perona_malik.R R/pixdim.R R/preprocess_mri_across.R R/preprocess_mri_within.R R/read_transformlist.R R/reapply_malf.R R/reg_flip.R R/reg_flip_img.R R/reg_whitestripe.R R/reg_zscore.R R/remove_neck.R R/reorder_neighborhood.R R/reproducible_ants.R R/resample_image.R R/resample_to_target.R R/robust_brain_mask.R R/scaled_neighborhood.R R/smooth_image.R R/smri_preproc.R R/ss_bias.R R/subset_4d.R R/tempants.R R/transformlist_from_outprefix.R R/window_img.antsImage.R R/within_visit_registration.R R/write_nifti_antsImage.R R/zero_pad.R R/zscore_template.R R/zzz.R R/zzz_accessors.R README.Rmd README.md

appveyor.yml

docs/404.html

docs/LICENSE-text.html

docs/articles/brain_extract.html

docs/articles/brain_extract_files/figure-html/t1_naive_plot-1.png

docs/articles/brain_extract_files/figure-html/t1_plot-1.png

docs/articles/brain_extract_files/figure-html/t1_ss-1.png

docs/articles/brain_extract_files/figure-html/t1_ss-2.png

docs/articles/brain_extract_files/figure-html/t1_ss_plot2-1.png

docs/articles/brain_extract_files/figure-html/t1_ss_red-1.png

docs/articles/brain_extract_files/figure-html/unnamed-chunk-3-1.png

docs/articles/brain_extract_files/header-attrs-2.1.3/header-attrs.js

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/accessor-methods.html

docs/reference/ants.extract.html

docs/reference/ants.overlay.html

docs/reference/ants2oro.html

docs/reference/antsCopy.html

docs/reference/ants_apply_transforms-methods.html

docs/reference/ants_bwlabel.html

docs/reference/ants_regwrite.html

docs/reference/applyEmptyImageDimensions-methods.html

docs/reference/apply_malf_regs.html

docs/reference/apply_multi_reg-methods.html

docs/reference/bias_correct.html

docs/reference/bias_ss.html

docs/reference/brain_extract.html

docs/reference/c3d.html

docs/reference/check_ants-methods.html

docs/reference/check_nifti-methods.html

docs/reference/checkimg-methods.html

docs/reference/compose_transform_to_file.html

docs/reference/corr_img.html

docs/reference/cort_thickness.html

docs/reference/create_moment.html

docs/reference/diff_self.html

docs/reference/double_remove_neck.html

docs/reference/emptyImageDimensionsMask-methods.html

docs/reference/face_removal_mask_ants.html

docs/reference/fill_2d_z.html

docs/reference/filler.html

docs/reference/finite_img-methods.html

docs/reference/fslbet_robust.html

docs/reference/group_xyz2.html

docs/reference/image_similarity.html

docs/reference/img_cov_matrix.html

docs/reference/img_density_entropy.html

docs/reference/img_hist_entropy.html

docs/reference/img_split.html

docs/reference/index.html

docs/reference/inpaint.html

docs/reference/jacobian_image.html

docs/reference/label_clusters.html

docs/reference/label_mask.html

docs/reference/largest_component.html

docs/reference/local_quantile_img.html

docs/reference/makepng.html

docs/reference/malf.html

docs/reference/malf_registration.html

docs/reference/maskEmptyImageDimensions-methods.html

docs/reference/multi_reg.html

docs/reference/multi_rereg.html

docs/reference/mutual_information.html

docs/reference/my.tab.html

docs/reference/n4_4d.html

docs/reference/neighborhood.html

docs/reference/neighborhood_index.html

docs/reference/oMask.html

docs/reference/oMath.html

docs/reference/oasis.html

docs/reference/oro2ants.html

docs/reference/ortho2-methods.html

docs/reference/otropos.html

docs/reference/otropos2.html

docs/reference/perona_malik.html

docs/reference/pixdim-methods.html

docs/reference/preprocess_mri_across.html

docs/reference/preprocess_mri_within.html

docs/reference/process_filenames.html

docs/reference/read_transformlist.html

docs/reference/reapply_malf.html

docs/reference/reg_flip.html

docs/reference/reg_flip_img.html

docs/reference/reg_whitestripe.html

docs/reference/reg_zscore.html

docs/reference/registration.html

docs/reference/remove_neck.html

docs/reference/reorder_neigh_indices.html

docs/reference/reproducible_ants.html

docs/reference/resample_image-methods.html

docs/reference/resample_to_target-methods.html

docs/reference/robust_brain_mask.html

docs/reference/scaled_neighborhood.html

docs/reference/sim.html

docs/reference/smooth_image.html

docs/reference/smri_preproc.html

docs/reference/ss_bias.html

docs/reference/stat_img.html

docs/reference/subset_4d-methods.html

docs/reference/tempants.html

docs/reference/transformlist_from_outprefix.html

docs/reference/within_visit_registration.html

docs/reference/write_transformlist.html

docs/reference/zero_pad.html

docs/reference/zscore_template.html

extrantsr.Rproj

man/accessor-methods.Rd man/ants.extract.Rd man/ants.overlay.Rd man/ants2oro.Rd man/antsCopy.Rd man/ants_apply_transforms-methods.Rd man/ants_bwlabel.Rd man/ants_regwrite.Rd man/applyEmptyImageDimensions-methods.Rd man/apply_malf_regs.Rd man/apply_multi_reg-methods.Rd man/bias_correct.Rd man/bias_ss.Rd man/brain_extract.Rd man/c3d.Rd man/check_ants-methods.Rd man/check_nifti-methods.Rd man/checkimg-methods.Rd man/compose_transform_to_file.Rd man/corr_img.Rd man/cort_thickness.Rd man/create_moment.Rd man/diff_self.Rd man/double_remove_neck.Rd man/emptyImageDimensionsMask-methods.Rd man/face_removal_mask_ants.Rd man/fill_2d_z.Rd man/filler.Rd man/finite_img-methods.Rd man/fslbet_robust.Rd man/group_xyz2.Rd man/image_similarity.Rd man/img_cov_matrix.Rd man/img_density_entropy.Rd man/img_hist_entropy.Rd man/img_split.Rd man/inpaint.Rd man/jacobian_image.Rd man/label_clusters.Rd man/label_mask.Rd man/largest_component.Rd man/local_quantile_img.Rd man/makepng.Rd man/malf.Rd man/malf_registration.Rd man/maskEmptyImageDimensions-methods.Rd man/multi_reg.Rd man/multi_rereg.Rd man/mutual_information.Rd man/my.tab.Rd man/n4_4d.Rd man/neighborhood.Rd man/neighborhood_index.Rd man/oMask.Rd man/oMath.Rd man/oasis.Rd man/oro2ants.Rd man/ortho2-methods.Rd man/otropos.Rd man/otropos2.Rd man/perona_malik.Rd man/pixdim-methods.Rd man/preprocess_mri_across.Rd man/preprocess_mri_within.Rd man/process_filenames.Rd man/read_transformlist.Rd man/reapply_malf.Rd man/reg_flip.Rd man/reg_flip_img.Rd man/reg_whitestripe.Rd man/reg_zscore.Rd man/registration.Rd man/remove_neck.Rd man/reorder_neigh_indices.Rd man/reproducible_ants.Rd man/resample_image-methods.Rd man/resample_to_target-methods.Rd man/robust_brain_mask.Rd man/scaled_neighborhood.Rd man/sim.Rd man/smooth_image.Rd man/smri_preproc.Rd man/ss_bias.Rd man/stat_img.Rd man/subset_4d-methods.Rd man/tempants.Rd man/transformlist_from_outprefix.Rd man/within_visit_registration.Rd man/write_transformlist.Rd man/zero_pad.Rd man/zscore_template.Rd mid_sagittal_align.R

vignettes/.gitignore

vignettes/brain_extract.Rmd

muschellij2/extrantsr documentation built on July 27, 2021, 7:41 a.m.