scaled_neighborhood: Get Scaled Neighborhood of Voxels from an Image

In muschellij2/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

This function wraps the neighborhood to provided scaled neighborhood or its ranks

Usage

scaled_neighborhood(
  img,
  mask = NULL,
  radius = rep(1, 3),
  method = c("pearson", "spearman"),
  center = TRUE,
  scale = TRUE,
  verbose = TRUE
)

Arguments

img	Object of class nifti, character or antsImage
mask	Binary image of class nifti, antsImage, character. Only neighborhoods inside the mask will be taken
radius	vector of length 3 for number of voxels to go in each direction. Default is 27 neighbors (including voxel at center). Passed to getNeighborhoodInMask.
method	If pearson, scaling done on original data. If spearman, the ranks.
center	Should the data be centered
scale	Should the data be scaled
verbose	print diagnostic messages

Value

List similar to the output of getNeighborhoodInMask

muschellij2/extrantsr documentation built on July 27, 2021, 7:41 a.m.