malf_registration: Multi-Atlas Label Fusion Registration

In muschellij2/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

Takes in an input file and template images with a set of template structures and registers them

Usage

malf_registration(
  infile,
  template.images,
  template.structs,
  inverted = FALSE,
  typeofTransform = "SyN",
  interpolator = "NearestNeighbor",
  keep_images = TRUE,
  outfiles = NULL,
  outprefix = NULL,
  verbose = TRUE,
  rerun_registration = TRUE,
  image_interpolator = "Linear",
  ...
)

Arguments

infile	Input Image file
template.images	Template Images to register to infile
template.structs	Template gold standards to apply registration into infile space
inverted	Should the MALF be inverted (infile to template then use inverse transforms)
typeofTransform	type of transformed used, passed to antsRegistration
interpolator	interpolation done for antsApplyTransforms for the structures
keep_images	Keep the template.structs in infile space
outfiles	Output filenames for template.structs in infile space
outprefix	passed to registration if keep_regs = TRUE
verbose	Print diagnostic output
rerun_registration	Should malf be run again if transforms already exist?
image_interpolator	interpolation done for antsApplyTransforms for the images, rarely used
...	Arguments to be passed to registration

Value

List of registrations and output files

muschellij2/extrantsr documentation built on July 27, 2021, 7:41 a.m.