smri_preproc: Standard MRI Preprocessing

In muschellij2/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Standard MRI Preprocessing

Description

This function performs robust skull stripping on the T1, then preprocessing within visit

Usage

smri_preproc(
  files,
  window = FALSE,
  outfiles = NULL,
  maskfile = NULL,
  correct = TRUE,
  correction = "N4",
  correct_after_mask = TRUE,
  verbose = TRUE,
  ...
)

Arguments

files	filenames (or nifti objects) of images to be processed. Will register to the first scan
window	Should robust_window before running?
outfiles	(character) name of output files, with extension
maskfile	Filename (or nifti object) of mask for image to be registered to
correct	do Bias field correction
correction	(character) N3 or N4 correction?
correct_after_mask	Should the inhomogeneity correction be run after masking.
verbose	Diagnostic messages
...	arguments to preprocess_mri_within

Value

List from preprocess_mri_within

muschellij2/extrantsr documentation built on June 3, 2024, 7:04 p.m.