reapply_malf: Reapply MALF Operation

In muschellij2/extrantsr: Extra Functions to Build on the 'ANTsR' Package

Description

Takes in an input file, set of registrations, and a set of template structures and applies the registrations, with a different interpolator if necessary, and then combines output

Usage

reapply_malf(
  infile,
  regs,
  template.structs,
  keep_images = FALSE,
  outfiles = NULL,
  outfile = NULL,
  retimg = TRUE,
  func = "mode",
  ties.method = "first",
  interpolator = NULL,
  verbose = TRUE,
  ...
)

Arguments

infile	Input Image file
regs	List of registrations from malf or malf_registration, each element must have fwdtransforms and interpolator. Same length as template.structs
template.structs	Template gold standards to apply registration into infile space
keep_images	Keep the template.structs in infile space
outfiles	Output filenames for template.structs in infile space
outfile	Fused output filename
retimg	Return Image to user using readnii
func	function to combine labels. See stat_img.
ties.method	If func = "mode", then this is passed to stat_img.
interpolator	interpolation done for antsApplyTransforms, can be different than original MALF
verbose	Print diagnostic output
...	Arguments to be passed to ants_apply_transforms

Value

The output filename or the nifti image or list of registrations and output file

muschellij2/extrantsr documentation built on July 27, 2021, 7:41 a.m.