applytopup: applytopup - calling FSL applytopup

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

applytopup - calling FSL applytopup

Description

A tool for applying and correcting estimated susceptibility induced distortions

Usage

applytopup(
  infile,
  datain,
  index,
  topup_files,
  out = NULL,
  method = c("lsr", "jac"),
  interp = c("spline", "trilinear"),
  verbose = TRUE
)

apply_topup(...)

fsl_applytopup(...)

Arguments

infile	list of names of input image (to be corrected)
datain	name of text file with PE directions/times
index	list of indices into –datain of the input image (to be corrected)
topup_files	name of field/movements (from topup)
out	basename for output (warped) image
method	Use jacobian modulation (jac) or least-squares resampling (lsr), default=lsr.
interp	Image interpolation model, trilinear or spline. Default spline
verbose	Print diagnostic information while running
...	arguments passed to topup if using fsl_topup

muschellij2/fslr documentation built on May 10, 2024, 2:12 a.m.