flirt_apply: Apply Warp from FLIRT

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Apply Warp from FLIRT

Description

This function applies a matrix from flirt to other images

Usage

flirt_apply(
  infile,
  reffile,
  initmat,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

infile	(character) input filename
reffile	(character) reference image to be registered to
initmat	(character) Matrix of transformation
outfile	(character) output filename
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) pass to system
opts	(character) additional options to FLIRT
verbose	(logical) print out command before running
...	additional arguments passed to readnii.

Value

character or logical depending on intern

muschellij2/fslr documentation built on May 10, 2024, 2:12 a.m.