fsl_applywarp: Apply Warp from FNIRT

In muschellij2/fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

Apply Warp from FNIRT

Description

This function applies a coefficient map from fnirt to other images

Usage

fsl_applywarp(
  infile,
  reffile,
  warpfile,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

infile	(character) input filename
reffile	(character) reference image to be registered to
warpfile	(character) reference image to be registered to
outfile	(character) output filename
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) pass to system
opts	(character) additional options to FLIRT
verbose	(logical) print out command before running
...	additional arguments passed to readnii.

Value

character or logical depending on intern

muschellij2/fslr documentation built on May 10, 2024, 2:12 a.m.