spm12_normalize_est: SPM12 Normalize (Estimate)

In muschellij2/spm12r: Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'

SPM12 Normalize (Estimate)

Description

Estimate SPM12 (Spatial) Normalization from image

Usage

spm12_normalize_est(
  filename,
  biasreg = 0.001,
  biasfwhm = 60,
  regularization = c(0, 0.001, 0.5, 0.05, 0.2),
  affine = c("mni", "eastern", "subj", "none", ""),
  smoothness = 0,
  sampling_distance = 3,
  add_spm_dir = TRUE,
  spmdir = spm_dir(verbose = verbose, install_dir = install_dir),
  clean = TRUE,
  verbose = TRUE,
  install_dir = NULL,
  ...
)

Arguments

filename	File to be normalized to the template
biasreg	Amount of bias regularization
biasfwhm	FWHM of Gaussian smoothness of bias.
regularization	parameters for warping regularization
affine	Space to register the image to, using an affine registration
smoothness	FWHM of smoothing done
sampling_distance	amount of smoothing of the warping field. This is used to derive a fudge factor to account for correlations between neighbouring voxels. Smoother data have more
add_spm_dir	Add SPM12 directory from this package
spmdir	SPM dir to add, will use package default directory
clean	Remove scripts from temporary directory after running
verbose	Print diagnostic messages
install_dir	directory to download SPM12
...	Arguments passed to run_spm12_script

Value

Result from run_matlab_script

muschellij2/spm12r documentation built on Aug. 31, 2022, 9:49 p.m.