spm12_results: SPM12 Results Report

In muschellij2/spm12r: Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'

SPM12 Results Report

Description

SPM12 Results Report

Usage

spm12_results(
  ...,
  add_spm_dir = TRUE,
  spmdir = spm_dir(verbose = verbose, install_dir = install_dir),
  clean = TRUE,
  verbose = TRUE,
  display = FALSE,
  desktop = FALSE,
  install_dir = NULL
)

build_spm12_results(
  spm,
  units = c("Volumetric", "Scalp-Time", "Scalp-Frequency", "Time-Frequency",
    "Frequency-Frequency"),
  result_format = c("none", "ps", "eps", "png", "pdf", "jpg", "tif", "fig", "csv",
    "nidm"),
  write_images = c("none", "threshold_spm", "binary_clusters", "nary_clusters"),
  contrast_list = NULL,
  image_basename = NULL,
  ...
)

Arguments

...	Arguments passed to matlabbatch_to_script
add_spm_dir	Add SPM12 directory from this package
spmdir	SPM dir to add, will use package default directory
clean	Remove scripts from temporary directory after running
verbose	Print diagnostic messages
display	Run run_matlab_script with the display option on, which is required in some cases of output. May fail if no displays are available.
desktop	Run run_matlab_script with the desktop option on. May fail if no displays are available.
install_dir	directory to download SPM12
spm	Path to SPM.mat file
units	Units of the data
result_format	Output format to save, if any
write_images	Type of images to write out
contrast_list	List of contrasts (or just one), to pass to spm12_contrast_query_list
image_basename	Base stub of filenames, if any are to be written out

Value

A list of output and results

muschellij2/spm12r documentation built on Aug. 31, 2022, 9:49 p.m.