Files in n8thangreen/IDEAdectree

The IDEA study clinical data health economics analysis with decision trees

R/CEAC-CEplane.R R/EXPI.R R/IDEAdectree_simple.R R/allgrids.R R/calcPatientCostofTests.R R/clean-data-fns.R R/cleanData.R R/createOutcomeTable.R R/createTimeToDiagnosisTable.R R/data-COSTdistns.R R/data-TBdata_clinical_cleaned.R R/enhanceddiagcost_table.R R/estimateTimeToDiagnosis.R R/idealised-pathway-cost.R R/idealised-pathway-time-to-diag.R R/indiv-dectree-sampling.R R/is_empty.R R/make_ruleoutTable-bysubgroups.R R/make_ruleoutTable-fixed.R R/make_ruleoutTable-pre.R R/my-bcea-plotting-fns.R R/plot_riskprofile.R R/readFromDatabaseExtract.R R/rpert.R R/sensspec_env.R R/summaryTable.R R/surface-plotting.R R/tidyBALdata.R README.Rmd README.md doc/cost_and_time_to_diagnosis.R doc/cost_and_time_to_diagnosis.Rmd doc/cost_and_time_to_diagnosis.pdf man/COST.distns.Rd man/EstimateSymptomsResolved.Rd man/GroupDiagOutcomes.Rd man/IDEAdectree.simple.Rd man/INMB.Rd man/MoM.beta.Rd man/MoM.gamma.Rd man/addLevel_Nottaken.Rd man/as.Date.POSIX.Rd man/assert.dateinpast.Rd man/boot.calcIdealisedTestCosts.Rd man/boot.testPerformanceMetricTable.Rd man/bootstrap.data.Rd man/calc.EVPI.Rd man/calc.enhancedDiagTimeAndCost.bootsample.Rd man/calc.statOutcomeByCovariate.Rd man/calc.summarystats_Dosanjh_TimeCost.Rd man/calc.testDate.min.Rd man/calcExpectedINMB.Rd man/calcIdealisedTestCosts.Rd man/calcIdealisedTimetoDiag.Rd man/calcPatientCostofTests.Rd man/calcRiskFactorScore.Rd man/cleanData.Rd man/combineTestResults.Rd man/create.indivpathmatrix.Rd man/data.Rd man/diag_Sxest.Rd man/diag_Sxobs.Rd man/estimateTimeToDiagnosis.Rd man/fillInEndOfTreatmentDate.Rd man/get.allDataTestCombinations.Rd man/get.meansdOutcomeByCovariate.Rd man/get.meansdStartToDiagByCovariate.Rd man/get.sd.from.normalCI.Rd man/get.statStartToDiagByCovariate.Rd man/get.uniqueDataTestCombinations.Rd man/getDateFrequencies.Rd man/is.diagByClinicalFeatures.Rd man/is.empty.Rd man/join.stratifiedOutcomeTables.Rd man/joinLevels.Rd man/joinWithLookups.Rd man/make.ruleoutTable.FNtime.Rd man/make.ruleoutTable.bootsample.Rd man/make.ruleoutTable.cat4percent.Rd man/make.ruleoutTable.fixed.Rd man/make.ruleoutTable.highrisk.Rd man/make.ruleoutTable.pre.Rd man/make.tableDiagCost_bootmeanse.Rd man/make.testFreqTable.Rd man/make.testPerformanceMetricsTable.Rd man/makeExpectedINMBtable.Rd man/maketable.CEAC_estimates.Rd man/my.plot.bcea.Rd man/my.plot.ceac.Rd man/plot.EVPI.Rd man/plot.riskprofile.Rd man/plotCEAC.xSens.groupSpecCost.Rd man/plotCEplane.Rd man/readFromDatabaseExtract.Rd man/rm.TooEarly.Rd man/rmPatientsInCleaning.Rd man/rpert.Rd man/senspec.env.Rd man/summaryTable.Rd man/tests.Rd man/testsdummy.allIdeaTests.Rd man/testsdummy.allPossTests.Rd man/testsdummy.preCultTreatAll.Rd man/tidyBALSputumdata.Rd man/tidyCSFdata.Rd man/tidyCTdata.Rd man/tidyCXRdata.Rd report_docs/25quantiles-basecase-QFN-TSPOT.Rmd report_docs/25quantiles-basecase-QFN-TSPOT.md report_docs/65quantiles-basecase-QFN-TSPOT.Rmd report_docs/65quantiles-basecase-QFN-TSPOT.md report_docs/APPENDIX-all_outputs_together.Rmd report_docs/APPENDIX-all_outputs_together.md report_docs/MAINCHAPTER-basecase-QFN_TSPOT.Rmd report_docs/MAINCHAPTER-basecase-QFN_TSPOT.md report_docs/SENSITIVITY_QFN_TSPOT-HIV-WITHindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-HIV-noindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-HIV-noindeterminates-RUNS.md report_docs/SENSITIVITY_QFN_TSPOT-HIVneg-WITHindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-HIVneg-noindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-HIVneg-noindeterminates-RUNS.md report_docs/SENSITIVITY_QFN_TSPOT-HIVpos-WITHindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-HIVpos-noindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-WITHindeterminates-RUNS.Rmd report_docs/SENSITIVITY_QFN_TSPOT-noindeterminates-RUNS.Rmd report_docs/archive/basecase-QFN_TSPOT-noHIVneg.Rmd report_docs/basecase-QFN_TSPOT-noHIVneg.md report_docs/basecase-QFN_TSPOT.md report_docs/highlevel-script.R report_docs/indiv-dectree_QFN_TSPOT-HIV-WITHindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-HIV-WITHindeterminates-RUNS.pdf report_docs/indiv-dectree_QFN_TSPOT-HIV-noindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-HIVneg-WITHindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-HIVneg-noindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-HIVpos-WITHindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-HIVpos-noindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-WITHindeterminates-RUNS.md report_docs/indiv-dectree_QFN_TSPOT-noindeterminates-RUNS.md tests/QALYs.R tests/testthat.R tests/testthat/tester.R