API for nachoryu/ASpediaFI
ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events
| Global functions | |
|---|---|
| ASpediaFI | Man page Source code |
| ASpediaFI-accessor | Man page |
| ASpediaFI-class | Man page |
| GSE114922.fpkm | Man page |
| GSE114922.psi | Man page |
| SplicingReads | Source code |
| analyze | Source code |
| analyzeFI | Man page Source code |
| annotate | Source code |
| annotateASevents | Man page Source code |
| as.table | Man page |
| as.table,ASpediaFI-method | Man page |
| as.table<- | Man page |
| as.table<-,ASpediaFI-method | Man page |
| createAnnotationTrack_event | Source code |
| createAnnotationTrack_transcripts | Source code |
| createExonTable | Source code |
| createTxnTrack | Source code |
| detect | Source code |
| detectALSS | Source code |
| detectEventFromTxDb | Source code |
| detectRI | Source code |
| detectSEandMXE | Source code |
| drawr | Source code |
| events | Man page |
| events,ASpediaFI-method | Man page |
| events<- | Man page |
| events<-,ASpediaFI-method | Man page |
| exportNetwork | Man page Source code |
| filterEvent | Source code |
| gene.table | Man page |
| gene.table,ASpediaFI-method | Man page |
| gene.table<- | Man page |
| gene.table<-,ASpediaFI-method | Man page |
| gtf | Man page |
| gtf,ASpediaFI-method | Man page |
| gtf<- | Man page |
| gtf<-,ASpediaFI-method | Man page |
| makeGRangesListFromEvent | Source code |
| mapTranscriptsA3SSevent | Source code |
| mapTranscriptsA5SSevent | Source code |
| mapTranscriptsMXEevent | Source code |
| mapTranscriptsRIevent | Source code |
| mapTranscriptsSEevent | Source code |
| network | Man page |
| network,ASpediaFI-method | Man page |
| network<- | Man page |
| network<-,ASpediaFI-method | Man page |
| pathway.table | Man page |
| pathway.table,ASpediaFI-method | Man page |
| pathway.table<- | Man page |
| pathway.table<-,ASpediaFI-method | Man page |
| psi | Man page |
| psi,ASpediaFI-method | Man page |
| psi<- | Man page |
| psi<-,ASpediaFI-method | Man page |
| quantify | Source code |
| quantifyPSI | Man page Source code |
| samples | Man page |
| samples,ASpediaFI-method | Man page |
| samples<- | Man page |
| samples<-,ASpediaFI-method | Man page |
| visualize | Man page Source code |
| visualizeEvent | Source code |
| visualizeNetwork | Source code |
