Man pages for nationalparkservice/mojn-sv-rpackage
QC, Analysis, and Visualization of Spring Vegetation Data
| BoxplotDisturbanceCover | Disturbance percent cover, broken down by disturbance type. |
| BoxplotInvSpeciesRichness | Boxplot of inventory species richness over time |
| BoxplotLPISpeciesRichness | Boxplot of LPI species richness over time |
| BoxplotSpeciesByStratum | LPI canopy species count by transect and stratum |
| BoxplotSpeciesRichnessBySOP | Boxplot comparing LPI species richness to inventory species... |
| BoxplotWaterPercentCover | Boxplot of water percent cover over time |
| CalculateSpeciesAccumulation | Species Accumulation Curve by spring |
| CanopyPercentCover | LPI canopy cover by transect |
| CloseDatabaseConnection | Close a Connection to the Spring Veg Database |
| CountInvSpeciesDetected | Inventory species richness |
| CountLPISpeciesDetected | LPI species richness |
| CountSpeciesByStratum | LPI canopy species count by transect and stratum |
| CountSpeciesDetected | Comparison of LPI and vegetation inventory species richness |
| DisturbancePercentCover | Disturbance cover by disturbance type and transect |
| FacetTitle | Create a vector of labels for plots faceted by field season |
| FormatPlot | Apply some standard formatting to a ggplot object. |
| GetDataAvailability | See data availability by park, spring, field season, and SOP. |
| GetDisturbanceTypes | List disturbance types monitored as part of the spring veg... |
| GetRawData | Raw data dump |
| GetSampleSizes | Compute sample size by spring and field season |
| GetSpringName | Get the name of a spring from the spring code |
| HistogramCanopyPercentCover | Histogram of LPI canopy cover |
| LpiQcDuplicateSpecies | List occurrences of duplicate plant species in LPI data |
| LpiQcMissingPoints | Check for missing LPI points |
| LpiQcTBDSpecies | List occurrences of "TBD" unknown plant species in LPI data |
| LpiQcUNKSpecies | List occurrences of "UNK" unknown plant species in LPI data |
| OpenDatabaseConnection | Open a Connection to the Spring Veg Database |
| QcListNoData | List rows of data where one or more columns is missing data... |
| QcReportDPL | Report DPL by transect for all SOPs |
| QcUnknownSpeciesID | List unknown species codes that have been ID'd to more than... |
| ReadAndFilterData | Read spring vegetation data from database or .csv |
| SaveDataToCsv | Save spring vegetation analysis views as a set of .csv files |
| SpeciesAccumulationCurve | Species accumulation curve of one spring in one field season |
| SpInvQcDuplicateSpecies | List occurrences of duplicate plant species in species... |
| SpInvQcTBDSpecies | List occurrences of "TBD" unknown plant species in veg... |
| SpInvQcUNKSpecies | List occurrences of "UNK" unknown plant species in veg... |
| TableSpeciesPerTransect | Table of species detected through LPI vs veg inventory |
| TableTreePresenceAbsence | Table of tree presence/absence by spring and field season |
| TreeCtQcDuplicateSpecies | List occurrences of duplicate plant species in tree count... |
| TreeCtQcTBDSpecies | List occurrences of "TBD" unknown plant species in tree count... |
| TreeCtQcUNKSpecies | List occurrences of "UNK" unknown plant species in tree count... |
| TreePresenceAbsence | Number of transects with and without trees, by spring and... |
| WaterPercentCover | Water percent cover by transect |
