CountLPISpeciesDetected: LPI species richness

In nationalparkservice/mojn-sv-rpackage: QC, Analysis, and Visualization of Spring Vegetation Data

Description

LPI species richness

Usage

CountLPISpeciesDetected(conn, path.to.data, park, spring, field.season,
  data.source = "database")

Arguments

conn	Database connection generated from call to OpenDatabaseConnection(). Ignored if data.source is "local".
path.to.data	The directory containing the csv data exports generated from SaveDataToCsv(). Ignored if data.source is "database".
park	Optional. Four-letter park code to filter on, e.g. "MOJA".
spring	Optional. Spring code to filter on, e.g. "LAKE_P_BLUE0".
field.season	Optional. Field season name to filter on, e.g. "2019".
data.source	Character string indicating whether to access data in the spring veg database ("database", default) or to use data saved locally ("local"). In order to access the most up-to-date data, it is recommended that you select "database" unless you are working offline or your code will be shared with someone who doesn't have access to the database.

Details

Omits TBD and UNK species from counts. Only includes data from visits labeled 'Primary.' Currently uses LPI canopy data only (plants recorded as soil surface are not included in species counts).

Value

A tibble with columns Park, SpringCode, SpringName, FieldSeason, TransectNumber, LPISpeciesCount

nationalparkservice/mojn-sv-rpackage documentation built on Oct. 29, 2021, 7:13 p.m.