flywire_cave_client: Low level access to the Flywire CAVE annotation system
In natverse/fafbseg: Support Functions for Analysis of FAFB EM Segmentation

flywire_cave_client

R Documentation

Low level access to the Flywire CAVE annotation system

Description

Low level access to the Flywire CAVE annotation system

Usage

flywire_cave_client(
  datastack_name = getOption("fafbseg.cave.datastack_name", "flywire_fafb_production")
)

Arguments

datastack_name

defaults to the value selected by choose_segmentation and to "flywire_fafb_production" when that is missing. See https://global.daf-apis.com/info/ for other options.

Details

This depends on installation of the Python caveclient library. See flywire_cave_query for more details.

Value

The caveclient.frameworkclient.CAVEclientFull Python module wrapped by reticulate.

Examples


fac <- flywire_cave_client()
fac$annotation$get_tables()
fac$annotation$get_table_metadata('nuclei_v1')

# annotation tables that have been materialised in order to map XYZ
# points onto current root ids (and immutable supervoxel ids)
# typically the same as fac$annotation$get_tables()
fac$materialize$get_tables()

info=fac$info$get_datastack_info()
# the default synapse table for the dataset
info$synapse_table


## Not run: 
# get help on python cave client
reticulate::py_help(fac$info$get_datastack_info)

## End(Not run)

natverse/fafbseg documentation built on Nov. 11, 2024, 9:50 p.m.