flywire_adjacency_matrix2: Fast adjacency matrices based on flywire connectome dumps

In natverse/fafbseg: Support Functions for Analysis of FAFB EM Segmentation

Fast adjacency matrices based on flywire connectome dumps

Description

Fast adjacency matrices based on flywire connectome dumps

Usage

flywire_adjacency_matrix2(
  rootids = NULL,
  inputids = NULL,
  outputids = NULL,
  sparse = TRUE,
  threshold = 0,
  version = NULL,
  Verbose = interactive()
)

Arguments

rootids	flywire root ids for the bodies to fetch all by all connectivity information.
inputids, outputids	identifiers for input and output bodies (use as an alternative to rootids)
sparse	Whether to return a sparse matrix (default FALSE)
threshold	For flywire_partner_summary only return partners with greater than this number of connections to the query neuron(s) (default of 0 returns all connections)
version	Optional CAVE version. The default value of NULL uses the latest data dump available unless options(fafbseg.flywire_connectome_data_version) has been set (which you can conveniently do using flywire_connectome_data_version()).
Verbose	Logical indication whether to print status messages during the query (default T when interactive, F otherwise).

Value

A sparse matrix (Matrix::dgCMatrix) or regular matrix.

Examples

## Not run: 
dm2pnkc=flywire_adjacency_matrix2(inputids="DM2_lPN_R", outputids="class:Kenyon_Cell_R")

## End(Not run)

natverse/fafbseg documentation built on Nov. 11, 2024, 9:50 p.m.