flycircuit-ids: Convert between different FlyCircuit identifiers

In natverse/flycircuit: Functions to support the analysis of the FlyCircuit single neuron dataset

Convert between different FlyCircuit identifiers

Description

fc_gene_name returns a character vector of gene_names of fly circuit neurons given idid or neuron Name

fc_idid returns an integer idid of a fly circuit neuron given gene_name or neuron Name

fc_neuron gets the neuron Name of a fly circuit neuron given gene_name or idid

Usage

fc_gene_name(x, ignore.case = TRUE)

fc_idid(x, ignore.case = TRUE)

fc_neuron(x, ignore.case = TRUE)

Arguments

x	Vector of flycircuit identifiers (integer idid, chaacter/factor gene_name/Name)
ignore.case	whether to ignore the case of the input.

Details

Depends on fcidtable dataframe

Value

character vector of gene_name/Name or integer vector of idid.

See Also

Other flycircuit-ids: fcidtable

Examples

fc_gene_name(1)
# "FruMARCM-M002262_seg001"
isTRUE(fc_idid("FruMARCM-M002262_seg001")==1)
isTRUE(fc_neuron("FruMARCM-M002262_seg001")=="fru-M-200266")

natverse/flycircuit documentation built on Jan. 26, 2023, 6:46 p.m.