branchRateMatrix: Compute exponentiated rate matrix for all branches

In ndukler/epiAllele: Tests for signals of variable rates of evolution between gene classes and lineages for probabalistic alleles

Description

Compute exponentiated rate matrix for all branches

Usage

branchRateMatrix(rate, branch.length, pi, log = TRUE)

Arguments

rate	vector of mutation rates, one per branch
branch.length	vector of branch lengths
pi	stationary distribution of allele frequencies
log	if TRUE returns log transition matricies

Value

a list of transition matricies, one entry for each specified branch length. The rows are the parental allele, the columns are the child allele.

ndukler/epiAllele documentation built on May 5, 2019, 4:50 p.m.