Compute the number of expected transitions per site between states based on the marginal joint probabilities
obj |
rateModel object |
subset |
The site indices for which should be summed over to compute the total number of expected transitions (NOT IMPLEMENTED) |
ncores |
Number of cores to use |
A data.table where each is labeled by site index, parent allele, and child allele, and the number transitions over the whole tree
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